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Claude Connector

Orain

The AI workbench for spatial multi-omics. Open whole-slide images, outline every cell, find tissue patterns across patient cohorts, and get a reviewed report, all from Claude.

View in the Claude registry
Integration details

Description

Orain stores your tissue data (H&E and IHC whole-slide images, multiplex imaging such as CODEX/PhenoCycler, IMC and mIF, and spatial transcriptomics such as Visium, Xenium and CosMx) and runs the pipelines on its own GPUs, so Claude never has to move a multi-gigabyte slide. From a conversation you can: - Bring data in: upload a file, ingest any public URL, or pull open-access TCGA/CPTAC slides from NCI GDC. - Open a slide in an interactive viewer and get a link to it. - Outline every nucleus, measure tissue versus airspace, and name each tissue piece or TMA core. - Compute patch embeddings and discover spatial tissue patterns that separate two groups of patients, such as responders versus non-responders or KRAS versus STK11. - Ask an analysis question. Orain's own analyst works in your project and returns an answer and a written, reviewed report. - Share a read-only link that a collaborator can open without logging in. Every result has a page in Orain where you can see it on the slide. You need an Orain account. Storage, rented compute and analyst questions are charged at cost from your workspace credit, and new workspaces start with free credit.

Integration type
Connector
Verification status
Community connector
Platform
Claude
Category
Data & Analytics

The broad Category that contains the Primary Subcategory.

Primary Subcategory
Scientific & Biomedical Research Data

The Primary Subcategory used for this profile’s headline score.

Secondary Subcategories
None listed

Other Subcategories where the Integration is listed.

Brand
Orain
Access
Account required
First tracked
2026-10-04
Tool count
30
Geography
US
Agent DiscoverabilityClaude Discoverability Score

Claude Connector discovery is coming soon

Community Connectors only appear in Claude’s registry.Once verified, organic discovery begins and we can calculate your score.Read more about Community Connector verification.

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What discovery looks like

Claude showing a list of relevant Connectors in a conversation

Claude can surface verified Connectors when they match a user’s Prompt.

Primary Subcategory
14 scoredVerified connectors by score · Community connectors A–Z
Primary Subcategory
1Amass Connector100/100
2Synthesize Bio38/100
3Helix GenoSphere8/100
4Synapse.org8/100
5LatchBio4/100
—AtomscalePending VerificationGet notified
—Cheméo, Chemical and Physical PropertiesPending VerificationGet notified
—ClinicalTrials.gov Explorer (by BLEN)Pending VerificationGet notified
—Dalea - Research Orchestration PlatformPending VerificationGet notified
—Dewey DataPending VerificationGet notified
—EpidemiakarttaPending VerificationGet notified
—KOREPending VerificationGet notified
—OrainPending VerificationGet notified
—Scispot.ioPending VerificationGet notified
—SeqoutPending VerificationGet notified
—smarts.bioPending VerificationGet notified
—Virtual Fly BrainPending VerificationGet notified
Tools

30 tools agents can invoke

Recommended guideHow to get your Claude Connector organically discoveredFollow the practical steps agents use to find, shortlist, and choose your Connector.Read guide
FAQs

Orain Claude Connector FAQ

How the directory, categories and Discoverability Score work.

Read the methodology
How do I improve Orain's Claude Connector discoverability?

The levers are the listing surface agents actually read: names, descriptions, keywords, tool metadata, and registry health. Which lever matters depends on where discovery breaks, which is what continuous measurement shows.

What are Orain alternatives on Claude?

As of 2026-10-05, Orain competes with Amass Connector, Synthesize Bio, Helix GenoSphere, Synapse.org, LatchBio, Benchling, ChEMBL, Clinical Trials and 17 more in Claude Scientific & Biomedical Research Data, ranked by public Discoverability Score.

Where is this profile measured?

This profile uses the geography attached to the latest public registry snapshot: US. Locale tags are intentionally omitted.